python main.py Fig.1F_4281-UT_S16_L001_R1_001.fastq.gz out/Fig.1F_4281-UT_S16_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_4281-UT_S21_L001_R1_001.fastq.gz out/Fig.1F_4281-UT_S21_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_4281-UT_S128_L001_R1_001.fastq.gz out/Fig.1F_4281-UT_S128_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_4855-CBE_S130_L001_R1_001.fastq.gz out/Fig.1F_4855-CBE_S130_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_4855-UT_S18_L001_R1_001.fastq.gz out/Fig.1F_4855-UT_S18_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_4855-UT-d5_S132_L001_R1_001.fastq.gz out/Fig.1F_4855-UT-d5_S132_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_9197-CBE_S134_L001_R1_001.fastq.gz out/Fig.1F_9197-CBE_S134_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_9197-UT_S19_L001_R1_001.fastq.gz out/Fig.1F_9197-UT_S19_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_9197-UT_S136_L001_R1_001.fastq.gz out/Fig.1F_9197-UT_S136_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_ctrl_CBE_S2_L001_R1_001.fastq.gz out/Fig.1F_ctrl_CBE_S2_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_ctrl-CBE_S31_L001_R1_001.fastq.gz out/Fig.1F_ctrl-CBE_S31_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_ctrl-CBE_S122_L001_R1_001.fastq.gz out/Fig.1F_ctrl-CBE_S122_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_ctrl-UT_S15_L001_R1_001.fastq.gz out/Fig.1F_ctrl-UT_S15_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_ctrl-UT_S29_L001_R1_001.fastq.gz out/Fig.1F_ctrl-UT_S29_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_ctrl-UT_S124_L001_R1_001.fastq.gz out/Fig.1F_ctrl-UT_S124_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_HD4208-CBE_S9_L001_R1_001.fastq.gz out/Fig.1F_HD4208-CBE_S9_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_HD4208-CBE_S32_L001_R1_001.fastq.gz out/Fig.1F_HD4208-CBE_S32_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_HD4208-UT_S10_L001_R1_001.fastq.gz out/Fig.1F_HD4208-UT_S10_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_HD4208-UT_S45_L001_R1_001.fastq.gz out/Fig.1F_HD4208-UT_S45_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_HD4281-CBE_S12_L001_R1_001.fastq.gz out/Fig.1F_HD4281-CBE_S12_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_HD4281-UT_S13_L001_R1_001.fastq.gz out/Fig.1F_HD4281-UT_S13_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_HD4855-CBE_S15_L001_R1_001.fastq.gz out/Fig.1F_HD4855-CBE_S15_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_HD4855-UT_S16_L001_R1_001.fastq.gz out/Fig.1F_HD4855-UT_S16_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_HD9197-CBE_S21_L001_R1_001.fastq.gz out/Fig.1F_HD9197-CBE_S21_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_HD9197-CBE_S46_L001_R1_001.fastq.gz out/Fig.1F_HD9197-CBE_S46_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_HD9197-UT_S22_L001_R1_001.fastq.gz out/Fig.1F_HD9197-UT_S22_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
python main.py Fig.1F_HD9197-UT_S59_L001_R1_001.fastq.gz out/Fig.1F_HD9197-UT_S59_L001_R1_001 -a GGGACTGCCGTGCCGGGCGGGAGACCGCCATGGCGACCCTGGAAAAGCTGATGAAGGCCTTCGAGTCCCTCAAGTCCTTC(YAR)CAACAG(CCG)CCACCGCCGCCGCCGCCGCCGCCGCCTCCTCAGCTTCCTCAGCCAAAG -rc --no_trim -amas 80
